DNA barcoding of Indian species of genus Lucilia (Dip., Calliphoridae) with two new country records

Document Type : Paper, English

Authors

1 Department of Zoology and Environmental Sciences, Punjabi University, Patiala, India

2 Department of Zoology, University of Kashmir, Srinagar, Jammu & Kashmir, India

10.22034/jesi.46.1.4

Abstract

Lucilia is a genus of flies causing myiasis and breeding in carrion making them a group of medical, veterinary and forensic importance. From India, the genus is represented by 8 species so far. Herein, we have reported two new records for the country (Lucilia bismarckensis Kurahashi and Lucilia silvarum (Meigen)) and provided an identification key to the known Indian species of the genus Lucilia.  Cytochrome oxidase subunit 1 (COI) sequences for three Indian species were generated and analyzed along with seven publicly available sequences retrieved from the GenBank, using Maximum Likelihood analysis. We found that COI could be used as a reliable marker for DNA based identification of the group as the species in question showed enough interspecific divergence and formed well supported clades.

Graphical Abstract

DNA barcoding of Indian species of genus Lucilia (Dip., Calliphoridae) with two new country records

Keywords

Main Subjects


Article Title [Persian]

دی ان ای بارکدینگ گونه‌های هندی جنس (Dip., Calliphoridae) Lucilia به همراه دو رکورد جدید کشوری

Authors [Persian]

  • میناکشی بهاتری 1
  • تنویر احمد دار 2
1 گروه جانورشناسی و علوم محیطی، دانشگاه پنجاب، پاتیالا، هند
2 گروه جانورشناسی، دانشگاه کشمیر، سرینگر، جامو و کشمیر، هند
Abstract [Persian]

Lucilia جنسی از مگس‌ها است که باعث ایجاد میاز و تولید مثل در لاشه حیوانات می‌شود و همین امر آنها را به گروهی با اهمیت در دامپزشکی و پزشکی قانونی تبدیل کرده است. این جنس تاکنون در هند با ۸ گونه شناخته شده است. در اینجا، دو رکورد جدید شامل گونه های Lucilia bismarckensis Kurahashi و Lucilia silvarum Meigen برای هندوستان گزارش می‌شود و یک کلید شناسایی برای گونه‌های شناخته شده هندی جنس Lucilia ارائه گردیده است. توالی‌های زیر واحد ۱ سیتوکروم اکسیداز (COI) برای سه گونه تعیین گردید و این توالی ها به همراه هفت توالی متناظر این ناحیه ژنی که از بانک ژن اخذ شده بود با استفاده از آنالیز حداکثر احتمال، تجزیه و تحلیل شدند. این بررسی نشان داد که COI می‌تواند به عنوان یک نشانگر قابل اعتماد برای شناسایی مولکولی این گروه استفاده شود، زیرا گونه‌های مورد نظر، واگرایی بین گونه‌ای کافی را نشان دادند و کلادهای قابل اعتمادی تشکیل دادند. 

Keywords [Persian]

  • شناسایی مولکولی
  • حشره‌شناسی قانونی
  • Lucilia bismarckensis
  • Lucilia silvarum
Aubertin, D. (1933) Revision of the genus Lucilia R.-D. (Diptera, Calliphoridae). Linnean Society Journal of Zoology, 38: 389–463. http://doi.org.10.1111/j.1096-3642.1933.tb00991
Bagsby, K. E., Byrd, J., Stern, A. & Hans, K. R. (2024)  Initial Blow Fly (Diptera: Calliphoridae) colonization of cats (Felis catus) in Indiana. Journal of Medical Entomology, 61(3): 535-540. http://doi.org.10.1093/jme/tjad170.
Bharti, M. & Kurahashi, H. (2010) Lucilia calviceps Bezzi, new record from India (Diptera: Calliphoridae), with a revised key to Indian species. Halteres, 2: 29-30.
Bharti, M. & Singh, B. (2017) DNA-based identification of forensically important blow flies (Diptera: Calliphoridae) from India. Journal of Medical Entomology 54(5):1151-1156. http://doi.org.10.1093/jme/tjx084.
Boehme, P., Amendt, J. & Zehner, R. (2012) The use of COI barcodes for molecular identification of forensically important fly species in Germany. Parasitology Research 110: 2325–2332. http://doi.org.10.1007/s00436-011-2767-8
Bolek, M. G. & Janovy, J. (2004) Observations on myiasis by the Calliphorids, Bufolucilia silvarum and Bufolucilia elongata, in wood frogs, Rana sylvatica, from Southeastern Wisconsin. Journal of Parasitology 90: 1169–1171. DOI: 10.1645/GE-246R
Davies, L. (1999) Seasonal and spatial changes in Blowfly production from small and large carcasses at Durham in lowland Northeast England. Medical and Veterinary Entomology 13: 245–251. https://doi.org/10.1046/j.1365-2915.1999.00135.x
DeBry, R., Timm, A. E., Dahlem, G. A. & Stamper, T. (2010) mtDNA-based identification of Lucilia cuprina (Wiedemann) and Lucilia sericata (Meigen) (Diptera: Calliphoridae) in the continental United States. Forensic Science International 202: 102–109.http://doi: 10.1016/j.forsciint.2010.04.038
DeBry, R., Timm, A. E., Wong, E. S., Stamper, T., Cookman, C. & Dahlem, G. A. (2012) DNA-Based identification of forensically important Lucilia (Diptera: Calliphoridae) in the continental United States. Journal of Forensic Sciences 58: 73–78. http://doi.org.10.1111/j.1556-4029.2012.02176.x­
Edgar, R. C. (2021) MUSCLE v5 enables improved estimates of phylogenetic tree confidence by ensemble bootstrapping, bioRxiv 2021.06.20.449169
 ErzinÇlioǧlu, Y. Z. (1987) The larval instars of the African blowfly, Calliphora croceipalpis Jaennicke, with a key to the genera of the third instars of African carrion-breeding Calliphoridae (Diptera), Bulletin of Entomological Research 77: 575–580 https://doi.org/ 10.1017/S0007485300012074.  
ErzinÇlioǧlu, Y. Z. (1990) The larvae of two closely-related blowfly species of the genus Chrysomya (Diptera, Calliphoridae), Entomologica Fennica 1: 151–153. https://doi. org/10.33338/ef.83474
Fremdt, H., Szpila, K., Huijbregts, J., Lindström, A., Zehner, R. & Amendt, J. (2012) Lucilia silvarum Meigen, 1826 (Diptera: Calliphoridae)—A new species of interest for forensic entomology in Europe. Forensic Science International 222: 335–339. https://doi.org/10.1016/j.forsciint.2012.07.013
GilArriortua, M., Salona Bordas, M. I., Caine, L. M., Pinheiro, F., de Pancorbo, M. M. (2013) Cytochrome b as a useful tool for the identification of blowflies of forensic interest (Diptera, Calliphoridae). Forensic Science International 228:132–136. http://doi.org.10.1016/j.forsciint.2013.02.037
Harvey, M. L., Mansell, M. W., Villet, M. H. & Dadour, I. R. (2003) Molecular identification of some forensically important blowflies of southern Africa and Australia. Medical and Veterinary Entomology 17: 363–369. http://doi.org.10.1111/j.1365-2915.2003.00452.x
Hebert, P. D. N., Cywinska, A., Ball, S. L. & deWaard, J. R. (2003) Biological identifications through DNA barcodes. Proceedings of Royal Entomological Society London B 270: 313–321. https://doi.org/10.1098/rspb.2002.2218
Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2016) MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35:1547-1549. https://doi.org/10.1093/molbev/msy096
Kurahashi, H. (1987) The Blow Flies of New Guinea, Bismarck Archipelago, and Bougainville Island (Diptera, Calliphoridae). The Entomological Society of Japan, 90pp
Kurahashi, H. & Thapa, V. K. (1994) Notes on the Nepalese calliphorid flies (Insecta: Diptera). Studies on the taxonomy, ecology and control of the medically important flies in India and Nepal. Japanese Journal of Sanitary Zoology 45: 179-252.
Liu, D. & Greenberg, B. (1989) Immature stages of some flies of forensic importance, Annals of Entomological Society of America 82: 80–93  https://doi.org/10.1093/aesa/82.1.80
Liu, Q. L., Cai, J. F., Chang, Y. F., Gu, Y., Guo, Y. D., Wang, X. H., Weng, J. F., Zhong, M., Wang, X., Yang, L., Wu, K. L, Lan, L. M., Wang, J. F. & Chen, Y. Q. (2011) Identification of forensically important blow fly species (Diptera: Calliphoridae) in China by mitochondrial cytochrome oxidase I gene differentiation. Insect Science 18: 554–564. http://doi.org.10.1111/j.1744-7917.2010.01377.x
Mirzakhanlou, A. A., Shayeghi, M., Vatandoost, H., Izadian, A., Karimi, Z. & Akbarzadeh, K. (2025) Species diversity of saprophagous flies (Diptera) in hospital grounds of Tehran, Iran. Journal of Entomological Society of Iran 45(1): 97-106. https://doi.org/10.61186/jesi.45.1.8
Reibe, S., Schmitz, J. & Madea, B. (2009) Molecular identification of forensically important blowfly species (Diptera: Calliphoridae) from Germany. Parasitology Research 106: 257–261. http://doi.org.10.1007/s00436-009-1657-9
Senior-White, R., Aubertin, D. & Smart, J. (1940) The fauna of British India, Diptera VI family Calliphoridae. Today and Tomorrow’s Printers and Publishers,New Delhi, India288pp
Sonet, G., Jordaens, K., Braet, Y., Bourguignon, L., Dupont, E., Backeljau, T., De Meyer, M. & Desmyter, S. (2013) Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France. ZooKeys 365: 307–328. http://doi.org.10.3897/zookeys.365.6027
Szpila, K., Williams, K., Soszynska, A., Ekanem, M., Heyns, M., Dinka, M. D. & Villet, M. (2024) Key for the identification of third instar larvae of African blowflies (Diptera: Calliphoridae) of forensic importance in death investigations. Forensic Science International 354 https://doi.org/10.1016/j.forsciint.2023.111889
Wallman, J. F., Leys, R. & Hogendoorn, K. (2005) Molecular systematics of Australian carrion-breeding blowflies (Diptera: Calliphoridae) based on mitochondrial DNA. Invertebrate Systematics 19: 1–15. http://doi.org.10.1071/IS04023
Wells, J. D. & Sperling, F. A. (2001) DNA-based identification of forensically important Chrysomyinae (Diptera: Calliphoridae). Forensic Science International 120(1-2):110-5. https://doi.org/10.1016/s0379-0738(01)00414-5
Wells, J. D., Wall, R. & Stevens, J. R. (2007) Phylogenetic analysis of forensically important Lucilia flies based on cytochrome oxidase I sequence: a cautionary tale for forensic species determination. International Journal of Legal Medicine 121: 229–233. http://doi.org. 10.1007/s00414-006-0147-1
Williams, K. A., Lamb, J. & Villet, M. H. (2016) Phylogenetic radiation of the greenbottle flies (Diptera,Calliphoridae, Luciliinae). ZooKeys 568: 59–86. http://doi.org.10.3897/zookeys.568.6696
Williams, K. A. & Villet, M. H. (2013) Ancient and modern hybridization between Lucilia sericata and L. cuprina (Diptera: Calliphoridae). European Journal of Entomology 110: 187–196. doi: 10.14411/eje.2013.029
Zumpt, F. K. E. (1965) Myiasis in man and animals in the old world: a textbook for physicians, veterinarians and zoologists. Butterworths, London, 277 pp.
CAPTCHA Image